Basic Information
Locus ID:
evm.TU.LG07.1126
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 26627731 | 26628966 | - | evm.TU.LG07.1126 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 47,076.72 Da | 58.16 | 76.62 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 89 | 132 | 5.73099E-21 | - |
| Pfam | PF13639 | Ring finger domain | 89 | 132 | 8.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 70 | 138 | 1.44E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 140 | 1.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 90 | 131 | 3.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 90 | 132 | 12.740079 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031250578.1 | E3 ubiquitin-protein ligase ATL42-like [Pistacia vera] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067FSQ0 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g041871mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology