Basic Information
Locus ID:
evm.TU.LG07.1007
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG07 | 25402515 | 25406188 | - | evm.TU.LG07.1007 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 34,983.07 Da | 41.90 | 87.08 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 53 | 104 | 3.90276E-20 | - |
| Pfam | PF12906 | RING-variant domain | 53 | 103 | 1.0E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 108 | 3.88E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 117 | 5.0E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 52 | 104 | 2.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 45 | 110 | 20.891933 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006451008.1 | uncharacterized protein LOC18054834 [Citrus clementina] | 0 |
| TrEMBL | A0A067GYE5 | RING-CH-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g021423mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology