Basic Information
Locus ID:
evm.TU.LG06.969
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 10101518 | 10103680 | - | evm.TU.LG06.969 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 80,787.90 Da | 38.79 | 68.38 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 591 | 710 | 9.6E-39 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 393 | 422 | 6.6E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 425 | 454 | 1.7E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 327 | 486 | 7.7E-28 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 394 | 423 | 2.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 425 | 457 | 5.6E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 391 | 425 | 11.136739 | IPR002885 |
| Coils | Coil | Coil | 576 | 596 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32450.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_006483319.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Citrus sinensis] | 0 |
| Q9SUU7 | Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067F2V6 | DYW_deaminase domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g004114mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology