Basic Information
Locus ID:
evm.TU.LG06.927
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 9483729 | 9485300 | - | evm.TU.LG06.927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.09 | 38,666.95 Da | 88.23 | 66.01 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 225 | 266 | 3.56548E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 20 | 54 | 2.0E-12 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 224 | 266 | 1.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 205 | 271 | 1.72E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 188 | 271 | 7.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 225 | 265 | 4.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 225 | 266 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 341 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024040331.1 | E3 ubiquitin-protein ligase RING1 isoform X1 [Citrus clementina] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067GPX7 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g018299mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology