Basic Information
Locus ID:
evm.TU.LG06.895
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 8990547 | 8992322 | + | evm.TU.LG06.895 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 32,506.85 Da | 37.94 | 81.40 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 234 | 278 | 9.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 225 | 283 | 2.5E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 193 | 283 | 4.9E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 235 | 277 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 235 | 278 | 12.149959 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_012854493.1 | PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Erythranthe guttata] | 0 |
| TrEMBL | A0A1R3IYR1 | Zinc finger, RING-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_08807 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.2008, evm.TU.LG03.2010, evm.TU.LG06.893 ... |