Basic Information
Locus ID:
evm.TU.LG06.894
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 8988954 | 8989803 | + | evm.TU.LG06.894 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 25,563.76 Da | 41.25 | 87.57 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 157 | 204 | 7.4E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 208 | 1.19E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 125 | 209 | 3.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 158 | 203 | 3.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 158 | 204 | 13.13841 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022751160.1 | uncharacterized protein LOC111299903 [Durio zibethinus] | 0 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6YT66 | Putative E3 ubiquitin-protein ligase RING1-like OS=Davidia involucrata OX=16924 GN=Din_003824 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.2008, evm.TU.LG03.2010, evm.TU.LG06.893 ... |