Basic Information
Locus ID:
evm.TU.LG06.892
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 8973433 | 8976318 | + | evm.TU.LG06.892 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 47,474.67 Da | 48.25 | 90.44 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 354 | 397 | 1.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 354 | 401 | 3.33E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 403 | 2.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 353 | 396 | 1.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 355 | 397 | 11.500827 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60080.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031281273.1 | probable E3 ubiquitin-protein ligase XERICO [Pistacia vera] | 0 |
| Q9P0P0 | E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IPI4 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_006232 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.891, evm.TU.LG06.892 |