Basic Information
Locus ID:
evm.TU.LG06.873
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 23328226 | 23339733 | + | evm.TU.LG06.873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 41,289.89 Da | 45.94 | 81.60 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 142 | 191 | 1.67149E-31 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.53727E-31 | - |
| Pfam | PF09280 | XPC-binding domain | 257 | 312 | 1.9E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-20 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 148 | 186 | 1.8E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 337 | 372 | 9.3E-11 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 84 | 1.75E-22 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 254 | 318 | 3.92E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 318 | 379 | 7.05E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 145 | 199 | 2.0E-12 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.8E-28 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 247 | 313 | 3.4E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 329 | 377 | 2.4E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 141 | 191 | 1.3E-22 | - |
| SMART | SM00165 | uba_6 | 148 | 188 | 2.5E-6 | IPR015940 |
| SMART | SM00165 | uba_6 | 337 | 374 | 2.4E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.3E-23 | IPR000626 |
| SMART | SM00727 | CBM | 255 | 298 | 1.3E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 379 | 4.3E-112 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 146 | 189 | 12.715573 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.087015 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 334 | 375 | 13.65536 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 363 | 378 | 1.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 331 | 347 | 1.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 348 | 362 | 1.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 283 | 305 | 1.1E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 116 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 119 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010692904.1 | ubiquitin receptor RAD23d isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A803M4E8 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology