Basic Information
Locus ID:
evm.TU.LG06.730
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 6947584 | 6950749 | - | evm.TU.LG06.730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 29,941.18 Da | 62.59 | 64.72 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 174 | 256 | 1.08036E-35 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 176 | 246 | 2.7E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 159 | 269 | 8.06E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 170 | 260 | 2.1E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 175 | 251 | 1.1E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 174 | 260 | 12.099839 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 273 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_044475613.1 | RNA-binding protein 2-like [Mangifera indica] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8P2H2 | RNA-binding protein 2-like OS=Rhodamnia argentea OX=178133 GN=LOC115739882 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology