Basic Information
Locus ID:
evm.TU.LG06.528
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 4867777 | 4881189 | + | evm.TU.LG06.528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 100,072.26 Da | 48.80 | 76.55 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 518 | 570 | 4.10654E-29 | - |
| Pfam | PF00412 | LIM domain | 518 | 572 | 9.8E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 667 | 874 | 7.3E-99 | IPR022087 |
| SUPERFAMILY | SSF56219 | DNase I-like | 48 | 332 | 1.44E-47 | IPR036691 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 510 | 543 | 7.03E-8 | - |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 40 | 341 | 1.0E-73 | IPR036691 |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 512 | 575 | 1.6E-12 | - |
| SMART | SM00726 | uim | 443 | 462 | 0.094 | IPR003903 |
| SMART | SM00726 | uim | 474 | 493 | 6.0 | IPR003903 |
| SMART | SM00132 | lim_4 | 517 | 569 | 3.1E-10 | IPR001781 |
| SMART | SM00128 | i5p_5 | 56 | 348 | 9.6E-51 | IPR000300 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 516 | 576 | 11.5633 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 443 | 462 | 8.814631 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 474 | 493 | 8.89486 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 518 | 552 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 439 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_021284999.1 | protein DA1 [Herrania umbratica] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3HXB2 | Inositol polyphosphate-related phosphatase OS=Corchorus olitorius OX=93759 GN=COLO4_26385 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology