Basic Information
Locus ID:
evm.TU.LG06.463
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 6064846 | 6070372 | - | evm.TU.LG06.463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 127,347.89 Da | 58.64 | 68.55 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 677 | 981 | 8.4367E-130 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 679 | 980 | 1.7E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 79 | 116 | 3.2E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 76 | 119 | 8.72E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 675 | 986 | 2.94E-83 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 69 | 121 | 1.5E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 671 | 993 | 3.1E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 678 | 983 | 50.732182 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 79 | 116 | 11.248342 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 79 | 116 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 679 | 694 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1011 | 1074 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1011 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1087 | 1107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1042 | 1070 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_021743660.1 | ubiquitin carboxyl-terminal hydrolase 16-like [Chenopodium quinoa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LUZ4 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology