Basic Information
Locus ID:
evm.TU.LG06.446
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5725831 | 5727221 | + | evm.TU.LG06.446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.10 | 33,952.69 Da | 36.85 | 59.91 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 60 | 1.11519E-17 | - |
| CDD | cd00325 | chitinase_GH19 | 83 | 311 | 1.68228E-113 | - |
| Pfam | PF00182 | Chitinase class I | 82 | 311 | 3.7E-128 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 23 | 60 | 5.1E-13 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 79 | 317 | 1.1E-106 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 67 | 2.62E-12 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 165 | 220 | 7.5E-120 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 87 | 317 | 7.5E-120 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 62 | 8.3E-17 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 23 | 60 | 6.7E-14 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 318 | 5.6E-123 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 62 | 10.781412 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 224 | 234 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 1.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 1.9E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 1.9E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_021740343.1 | basic endochitinase-like [Chenopodium quinoa] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803MEI5 | Chitin-binding type-1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology