Basic Information
Locus ID:
evm.TU.LG06.411
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 5124385 | 5125962 | + | evm.TU.LG06.411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 35,137.16 Da | 66.21 | 66.92 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 198 | 240 | 9.69567E-25 | - |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 8.3E-13 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 18 | 52 | 5.0E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 245 | 9.28E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 246 | 1.4E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.651561 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 135 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021838463.1 | probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Spinacia oleracea] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8B2Z5 | RING-type E3 ubiquitin transferase OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_007800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology