Basic Information
Locus ID:
evm.TU.LG06.36
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 305196 | 311420 | + | evm.TU.LG06.36 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 97,847.51 Da | 38.96 | 90.87 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 812 | 853 | 5.56703E-21 | - |
| Pfam | PF00012 | Hsp70 protein | 263 | 446 | 3.5E-15 | IPR013126 |
| Pfam | PF00012 | Hsp70 protein | 3 | 104 | 1.9E-20 | IPR013126 |
| Pfam | PF00069 | Protein kinase domain | 528 | 781 | 7.9E-27 | IPR000719 |
| Pfam | PF04564 | U-box domain | 808 | 878 | 6.1E-20 | IPR003613 |
| Pfam | PF00012 | Hsp70 protein | 117 | 257 | 1.9E-28 | IPR013126 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 2 | 152 | 1.59E-26 | IPR043129 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 503 | 793 | 4.1E-52 | IPR011009 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 167 | 322 | 2.43E-24 | IPR043129 |
| SUPERFAMILY | SSF57850 | RING/U-box | 805 | 878 | 7.06E-24 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 4 | 64 | 2.5E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 494 | 595 | 8.8E-23 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 156 | 200 | 2.0E-32 | - |
| Gene3D | G3DSA:3.90.640.10 | Actin; Chain A, domain 4 | 201 | 260 | 2.0E-32 | - |
| Gene3D | G3DSA:3.30.30.30 | - | 65 | 111 | 2.5E-22 | - |
| Gene3D | G3DSA:2.60.34.10 | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 330 | 480 | 2.7E-9 | IPR029047 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 807 | 881 | 1.7E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.420.40 | - | 263 | 304 | 6.8E-7 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 117 | 155 | 2.0E-32 | - |
| Gene3D | G3DSA:3.30.420.40 | - | 305 | 318 | 6.8E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 600 | 802 | 1.1E-37 | - |
| SMART | SM00504 | Ubox_2 | 811 | 874 | 8.6E-26 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 523 | 793 | 26.817158 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 807 | 881 | 31.350927 | IPR003613 |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 110 | 130 | 1.2E-5 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 276 | 292 | 1.2E-5 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 30 | 42 | 1.2E-5 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 2 | 15 | 1.2E-5 | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670312.2 | U-box domain-containing protein 33 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 7 | evm.TU.LG04.2270, evm.TU.LG04.2271, evm.TU.LG05.1432 ... |