Basic Information
Locus ID:
evm.TU.LG06.34
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 280073 | 286405 | + | evm.TU.LG06.34 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 98,638.48 Da | 47.57 | 78.84 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 807 | 848 | 1.32339E-23 | - |
| CDD | cd01989 | STK_N | 62 | 217 | 2.23986E-45 | - |
| Pfam | PF04564 | U-box domain | 804 | 873 | 9.3E-18 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 524 | 772 | 1.9E-40 | IPR000719 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 60 | 188 | 2.43E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 801 | 873 | 4.15E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 495 | 774 | 2.7E-67 | IPR011009 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 802 | 874 | 1.7E-26 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 504 | 591 | 7.0E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 592 | 792 | 3.2E-47 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 49 | 189 | 3.3E-6 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 806 | 869 | 1.0E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 519 | 785 | 6.9E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 519 | 786 | 34.732197 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 802 | 876 | 34.411537 | IPR003613 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 637 | 649 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 525 | 546 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 307 | - | - |
| Coils | Coil | Coil | 370 | 488 | - | - |
| Coils | Coil | Coil | 342 | 366 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670312.2 | U-box domain-containing protein 33 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M2X4 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology