Basic Information
Locus ID:
evm.TU.LG06.249
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 2160171 | 2174910 | - | evm.TU.LG06.249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 148,592.05 Da | 35.32 | 76.18 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 484 | 646 | 1.63935E-40 | - |
| CDD | cd10320 | RGL4_N | 48 | 334 | 3.10767E-71 | - |
| CDD | cd10317 | RGL4_C | 1103 | 1290 | 1.60264E-54 | - |
| CDD | cd10320 | RGL4_N | 660 | 950 | 3.83235E-72 | - |
| CDD | cd10316 | RGL4_M | 373 | 472 | 4.12631E-30 | IPR029413 |
| CDD | cd10316 | RGL4_M | 992 | 1091 | 2.1109E-29 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 51 | 242 | 1.2E-86 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 1015 | 1087 | 1.1E-23 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 661 | 856 | 3.6E-93 | IPR010325 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 396 | 467 | 1.6E-23 | IPR029413 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 1101 | 1288 | 3.9E-55 | IPR029411 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 482 | 645 | 7.7E-43 | IPR029411 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 479 | 644 | 3.74E-40 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 992 | 1081 | 1.08E-7 | IPR013784 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 411 | 467 | 2.55E-8 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 56 | 334 | 7.85E-7 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 1098 | 1290 | 9.35E-49 | IPR008979 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 666 | 951 | 1.0E-7 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1120 | - | 989 | 1083 | 1.7E-5 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 372 | 468 | 3.8E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 53 | 338 | 1.8E-7 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 480 | 660 | 1.1E-15 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 1099 | 1290 | 1.0E-21 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 661 | 958 | 2.7E-10 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_011016984.1 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105120478 [Populus euphratica] | 0 |
| TrEMBL | A0A061FFK8 | rhamnogalacturonan endolyase OS=Theobroma cacao OX=3641 GN=TCM_034547 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology