Basic Information
Locus ID:
evm.TU.LG06.1642
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
cell division
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 44099858 | 44117522 | + | evm.TU.LG06.1642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 130,103.82 Da | 40.47 | 80.25 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 909 | 1181 | 1.5E-44 | IPR001245 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 33 | 310 | 3.33E-45 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 886 | 1181 | 2.32E-72 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 172 | 338 | 1.8E-24 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 982 | 1190 | 2.1E-58 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 171 | 5.0E-22 | IPR015943 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 870 | 980 | 9.8E-26 | - |
| SMART | SM00320 | WD40_4 | 245 | 283 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 72 | 112 | 0.54 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 242 | 0.0037 | IPR001680 |
| SMART | SM00219 | tyrkin_6 | 904 | 1181 | 8.5E-27 | IPR020635 |
| SMART | SM00320 | WD40_4 | 115 | 154 | 0.092 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 62 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 198 | 0.59 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 904 | 1185 | 36.880566 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 910 | 933 | - | IPR017441 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 1032 | 1044 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 652 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 396 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 391 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05970.1 | Transducin/WD40 repeat-like superfamily protein. a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis | 0 |
| RefSeq | XP_010695325.1 | protein NEDD1 [Beta vulgaris subsp. vulgaris] | 0 |
| B3H5K9 | Protein NEDD1 OS=Arabidopsis thaliana OX=3702 GN=NEDD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0J8B9W9 | WD_REPEATS_REGION domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_5g124270 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34197 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1084, gene_15708 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020012 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38169, Sbi_jg6290 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15560 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003620 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01571, Sgl06742 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000029735, gene:ENSEOMG00000043344 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0013020, CQ.Regalona.r1.3BG0013070 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30175980 |
| Apiaceae | Apium graveolens | 1 | Ag10G01202 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G001260, COCNU_12G008120 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697585, gene-LOC103704120 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3608.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G33422 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05970.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012734m.g.v1.0, Thhalv10020101m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g09610.v2.2, Sp6g36920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g053750.2N, BniB02g054740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1169 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00990 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0075s00018.v1.0, Dusal.0178s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate03g13590, gene.Thate03g20800, gene.Thate04g17670 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1976, nbisL1-mrna-3967 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1788 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038786 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05339 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.1384, BH03.1506 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0521880, gene-QOZ80_6BG0476940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0470640.1 |
| Poaceae | Oryza coarctata | 2 | Oco17G001370, Oco18G001290 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g09470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G150100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702789, Pt_Chr0702792 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G003340, Chr11G015950 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G300000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG028140, gene_TRIDC5BG029600 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G171300.1, TraesCS5B02G168800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb095480_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28722 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29719 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1642, evm.TU.LG11.995 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00580 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.359, evm.TU.Scaffold_4_RagTag.1767 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14057, nbisL1-mrna-25971 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4, nbisL1-mrna-986 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14211, nbisL1-mrna-4568 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.136, evm.TU.utg000008l.989 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000753, Maker00010047 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2063, nbisL1-mrna-468 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-24376, nbisL1-mrna-9417 |
| Salicaceae | Populus euphratica | 2 | populus_peu06479, populus_peu20347 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132637738 |
| Solanaceae | Solanum chilense | 1 | SOLCI001325000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3640 |
| Zosteraceae | Zostera marina | 2 | Zosma01g15990.v3.1, Zosma04g15340.v3.1 |