Basic Information
Locus ID:
evm.TU.LG06.1587
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 25579640 | 25586798 | + | evm.TU.LG06.1587 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 122,833.29 Da | 50.13 | 70.18 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 595 | 896 | 1.219E-128 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 594 | 895 | 7.2E-46 | IPR001394 |
| Pfam | PF01753 | MYND finger | 74 | 111 | 7.9E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 69 | 113 | 2.62E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 590 | 901 | 1.63E-85 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 588 | 907 | 2.2E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 116 | 5.3E-13 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 594 | 898 | 51.433144 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.619952 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 595 | 610 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 905 | 948 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 975 | 1000 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 188 | 210 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_031264731.1 | ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Pistacia vera] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7H978 | Ubiquitin carboxyl-terminal hydrolase 16-like OS=Acer yangbiense OX=1000413 GN=EZV62_021855 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology