Basic Information
Locus ID:
evm.TU.LG06.1560
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD and tetratricopeptide repeats protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 23756347 | 23768078 | - | evm.TU.LG06.1560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 85,394.86 Da | 52.30 | 77.53 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 43 | 78 | 5.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 672 | 696 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 617 | 654 | 0.084 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 39 | 696 | 1.55E-51 | IPR036322 |
| SUPERFAMILY | SSF48452 | TPR-like | 403 | 482 | 4.43E-9 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 574 | 702 | 7.2E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 34 | 133 | 6.3E-19 | IPR015943 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 354 | 507 | 5.9E-12 | IPR011990 |
| Gene3D | G3DSA:2.130.10.10 | - | 134 | 340 | 9.8E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 612 | 655 | 0.32 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 176 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 658 | 697 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 81 | 123 | 0.0026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 268 | 307 | 330.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 39 | 78 | 1.3E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 46 | 81 | 12.393768 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 46 | 87 | 16.323217 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 665 | 696 | 9.472486 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 510 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 588 | 603 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 491 | 506 | - | - |
| Coils | Coil | Coil | 474 | 501 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10940.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006433870.1 | WD and tetratricopeptide repeats protein 1 isoform X2 [Citrus clementina] | 0 |
| Q94BQ3 | Protein ALTERED SEED GERMINATION 2 OS=Arabidopsis thaliana OX=3702 GN=ASG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7H870 | WD and tetratricopeptide repeats protein 1 OS=Acer yangbiense OX=1000413 GN=EZV62_021871 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10793, jg10794, jg6141 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1474 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023747 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008160 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg4152, Sbi_jg49651, Sbi_jg49653 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5605 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001009 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl10548 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000014894, gene:ENSEOMG00000014912 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0014930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041650 |
| Apiaceae | Apium graveolens | 1 | Ag3G00062 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007350, scaffold006700G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701791, gene-LOC103711005 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1883.V1.1, AsparagusV1_03.1885.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G09047 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G10940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012761m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g32550.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g051090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1229 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1334 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12330 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0067s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g04670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1560 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026722 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G03718 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4722, CH01.5298, Contig181.145 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0236560, gene-QOZ80_3BG0291480 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0406310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037494 |
| Poaceae | Oryza coarctata | 2 | Oco05G004880, Oco06G005000 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g08830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G455500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107708 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G002500, Chr07G008730 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G504800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG000190, gene_TRIDC4BG051620 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G002000.2, TraesCS4B02G303100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb006570_P001, Zm00001eb401530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2681, nbis-gene-4269 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1914, Zma_g4271 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1872, evm.TU.LG06.483 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g30000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.939 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18949 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18054 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6772 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.719 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010674 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13045 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10184 |
| Salicaceae | Populus euphratica | 3 | populus_peu18065, populus_peu32206, populus_peu32207 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627600 |
| Solanaceae | Solanum chilense | 1 | SOLCI004763800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015575 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8669 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2990 |
| Zosteraceae | Zostera marina | 1 | Zosma06g17020.v3.1 |