Basic Information
Locus ID:
evm.TU.LG06.1497
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Angio-associated migratory cell
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 21270798 | 21287579 | + | evm.TU.LG06.1497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 89,394.57 Da | 44.66 | 71.40 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 337 | 624 | 1.53138E-77 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 497 | 9.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 418 | 454 | 9.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 586 | 623 | 4.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 380 | 412 | 0.081 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 314 | 376 | 1.4E-4 | IPR024977 |
| Pfam | PF03966 | Trm112p-like protein | 693 | 802 | 2.1E-16 | IPR005651 |
| Pfam | PF00400 | WD domain, G-beta repeat | 504 | 541 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 552 | 582 | 2.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 337 | 622 | 4.03E-69 | IPR036322 |
| SUPERFAMILY | SSF158997 | Trm112p-like | 778 | 812 | 1.31E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 288 | 627 | 3.1E-102 | IPR015943 |
| Gene3D | G3DSA:2.20.25.10 | - | 691 | 813 | 2.3E-42 | - |
| SMART | SM00320 | WD40_4 | 373 | 412 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 502 | 541 | 2.5E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 544 | 582 | 6.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 499 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 370 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 415 | 454 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 288 | 328 | 0.067 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 624 | 1.4E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 592 | 625 | 10.842632 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 422 | 463 | 15.588017 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 422 | 459 | 11.866497 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 380 | 412 | 8.518333 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 338 | 368 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 380 | 421 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 509 | 550 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 508 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 509 | 543 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 379 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 592 | 625 | 9.09833 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 550 | 582 | 9.915599 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 550 | 591 | 12.981398 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 528 | 542 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 669 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 288 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22270.1 | Trm112p-like protein. Encodes SMO2 (Small Organ 2). Modulates progression of cell division during organ growth. | 0 |
| RefSeq | XP_006474506.1 | uncharacterized protein LOC102621276 isoform X1 [Citrus sinensis] | 0 |
| Q8LFJ5 | Multifunctional methyltransferase subunit TRM112 homolog A OS=Arabidopsis thaliana OX=3702 GN=TRM112A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5NBE8 | WD_REPEATS_REGION domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_029620 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23897 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1437, gene_14501 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003113, Ah023917 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009110, BVRB_5g108590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15737, Sbi_jg56529 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13753 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001822 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51448, Sgl56736 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004339 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0014160, CQ.Regalona.r1.5AG0011220 ... |
| Apiaceae | Apium graveolens | 2 | Ag3G00199, Ag4G02743 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G007010, scaffold002246G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711248 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1812.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G15152 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G22270.1, AT1G78190.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009116m.g.v1.0, Thhalv10019322m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g19780.v2.2, Sp5g33330.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g030130.2N, BniB03g057540.2N, BniB04g037430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1345 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1447 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g10570 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0152s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g08640 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1497, evm.TU.LG09.796 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005999, Pov_00037773 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.4024 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0577830, gene-QOZ80_7BG0609180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0123800.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039509 |
| Poaceae | Oryza coarctata | 2 | Oco13G013070, Oco14G013790 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g43020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G355300 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G014960, Chr28G012030 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G322600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG020600, gene_TRIDC2BG024510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G163100.1.cds1, TraesCS2B02G188900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb109660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-334 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5585, Zma_g6883 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1787 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g23030 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.996, evm.TU.Scaffold_8_RagTag.753 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9491 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13926 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6821 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.756 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010352 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17901, nbisL1-mrna-20028 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20309, nbisL1-mrna-9946 |
| Salicaceae | Populus euphratica | 3 | populus_peu14612, populus_peu14615, populus_peu32275 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627511 |
| Solanaceae | Solanum chilense | 1 | SOLCI003725400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016102 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_9633, gene_9902 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2790 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23110.v3.1 |