Basic Information
Locus ID:
evm.TU.LG06.142
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 1170520 | 1173209 | + | evm.TU.LG06.142 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 36,877.55 Da | 56.70 | 62.64 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 244 | 308 | 5.05699E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 32 | 117 | 1.03657E-47 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 244 | 311 | 2.9E-12 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 36 | 117 | 2.3E-17 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 26 | 128 | 1.57E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 241 | 315 | 1.31E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 229 | 322 | 5.1E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 21 | 127 | 2.1E-26 | IPR036431 |
| SMART | SM01014 | ARID_2 | 27 | 117 | 3.8E-32 | - |
| SMART | SM00501 | bright_3 | 31 | 122 | 6.8E-37 | IPR001606 |
| SMART | SM00398 | hmgende2 | 243 | 312 | 5.2E-14 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 30 | 121 | 25.717335 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 244 | 311 | 14.556314 | IPR009071 |
| Coils | Coil | Coil | 297 | 320 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_031260830.1 | high mobility group B protein 9 [Pistacia vera] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7H6Z0 | High mobility group B protein 9 OS=Acer yangbiense OX=1000413 GN=EZV62_021145 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology