Basic Information
Locus ID:
evm.TU.LG06.1412
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 18775596 | 18780382 | - | evm.TU.LG06.1412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 48,162.37 Da | 66.91 | 82.73 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 239 | 282 | 1.8729E-23 | - |
| CDD | cd02123 | PA_C_RZF_like | 29 | 169 | 5.75322E-48 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 239 | 282 | 1.5E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 67 | 146 | 1.0E-7 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 83 | 139 | 1.57E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 294 | 5.89E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 287 | 2.7E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 24 | 161 | 1.9E-24 | - |
| SMART | SM00184 | ring_2 | 240 | 281 | 2.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 282 | 12.312242 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 22 | 6.0 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_006473184.2 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Citrus sinensis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067GVY0 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g013394mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology