Basic Information
Locus ID:
evm.TU.LG06.1258
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Short Name:
PIFI
Description:
post-illumination chlorophyll fluorescence increase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35859364 | 35862297 | - | evm.TU.LG06.1258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 30,272.22 Da | 37.82 | 71.91 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15840.5 | post-illumination chlorophyll fluorescence increase. Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport. | 0 |
| RefSeq | XP_010691132.1 | protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LVZ5 | Protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PIFI PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RPS6 | Post-illumination chlorophyll fluorescence increase OS=Spinacia oleracea OX=3562 GN=SOVF_048240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18247, jg25435 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26209 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010560 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11576, Sbi_jg46517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20829 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005164 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55917, Sgl61923 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015634, gene:ENSEOMG00000037679 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009820, CQ.Regalona.r1.9AG0014800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30128390 |
| Apiaceae | Apium graveolens | 3 | Ag9G01172, Ag9G01175, AgUnG01436 |
| Arecaceae | Cocos nucifera | 1 | scaffold000460G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697596 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2491.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G23407 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022443m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g14150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g049030.2N, BniB07g028450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0322 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0336, Cgl09G1056 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01800 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32410, gene.Thate02g32420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.487 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027747 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16324 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.1448, CH01.1729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0227290, gene-QOZ80_3BG0272400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0721780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067105 |
| Poaceae | Oryza coarctata | 3 | Oco05G017520, Oco06G018210, Oco10G012170 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g38950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G164100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102984 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G014140, Chr07G022640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G655000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG053860, gene_TRIDC7BG046610 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G386300.1, TraesCS7B02G289200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb049190_P001, Zm00001eb219530_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20169 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3347 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1258, evm.TU.LG11.606 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1171 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6808 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-146 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21764 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.328 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004289 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16324 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21190, nbisL1-mrna-21398 |
| Salicaceae | Populus euphratica | 1 | populus_peu02575 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603649 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007380 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19229_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2208 |