Basic Information
Locus ID:
evm.TU.LG06.1256
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35831678 | 35847811 | - | evm.TU.LG06.1256 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 143,902.48 Da | 42.64 | 76.53 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 715 | 847 | 7.86298E-72 | - |
| CDD | cd17920 | DEXHc_RecQ | 514 | 714 | 3.33775E-103 | - |
| Pfam | PF09382 | RQC domain | 938 | 1053 | 2.3E-24 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 849 | 930 | 5.7E-16 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1096 | 1165 | 1.2E-15 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 526 | 694 | 2.7E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 731 | 837 | 3.4E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 492 | 857 | 1.89E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 713 | 982 | 1.06E-57 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1093 | 1177 | 8.72E-16 | IPR010997 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1089 | 1178 | 1.9E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 488 | 714 | 6.5E-92 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 934 | 1052 | 1.2E-20 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 715 | 933 | 5.6E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 520 | 723 | 1.1E-28 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1092 | 1175 | 1.3E-10 | IPR002121 |
| SMART | SM00956 | RQC_2 | 940 | 1051 | 1.3E-31 | IPR018982 |
| SMART | SM00490 | helicmild6 | 757 | 838 | 5.4E-28 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 516 | 991 | 5.4E-166 | IPR004589 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 747 | 788 | 8.718557 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 725 | 877 | 19.556499 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 532 | 707 | 21.342274 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1092 | 1175 | 19.565516 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 646 | 655 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1254 | 1278 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1185 | 1200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1173 | 1200 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021731817.1 | ATP-dependent DNA helicase Q-like 4A [Chenopodium quinoa] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9R0B5 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_127980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology