Basic Information
Locus ID:
evm.TU.LG06.1037
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG06 | 11357103 | 11358984 | + | evm.TU.LG06.1037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 17,990.63 Da | 20.30 | 99.19 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03017 | TNP1/EN/SPM transposase | 93 | 147 | 2.7E-4 | IPR004264 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 103 | 1.28E-6 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 156 | 2.3E-5 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 28 | 8.937796 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66240.3 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017969906.1 | PREDICTED: WD repeat-containing protein 82-B isoform X3 [Theobroma cacao] | 0 |
| Q9LYK6 | Protein ANTHESIS POMOTING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=APRF1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J0ENN5 | Transducin/WD40 repeat-like superfamily protein OS=Actinidia rufa OX=165716 GN=Acr_05g0015290 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.1037, evm.TU.LG09.461 |
| Poaceae | Oryza coarctata | 1 | Oco06G003180 |