Basic Information
Locus ID:
evm.TU.LG05.926
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 16685459 | 16702704 | - | evm.TU.LG05.926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 80,002.09 Da | 40.82 | 88.16 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 71 | 279 | 3.67957E-126 | - |
| CDD | cd18794 | SF2_C_RecQ | 280 | 416 | 2.54729E-68 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 307 | 406 | 1.2E-15 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 91 | 259 | 5.4E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 419 | 475 | 2.2E-10 | IPR032284 |
| Pfam | PF09382 | RQC domain | 482 | 580 | 6.7E-5 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 603 | 661 | 8.7E-9 | IPR002121 |
| SUPERFAMILY | SSF47819 | HRDC-like | 601 | 671 | 1.13E-6 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 422 | 1.26E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 280 | 476 | 1.0E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 47 | 279 | 9.3E-87 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 598 | 666 | 1.6E-11 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 480 | 581 | 3.2E-23 | IPR036388 |
| SMART | SM00487 | ultradead3 | 85 | 288 | 9.4E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 326 | 407 | 2.3E-26 | IPR001650 |
| SMART | SM00956 | RQC_2 | 484 | 581 | 0.0024 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 82 | 514 | 8.9E-161 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 595 | 673 | 13.644993 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 450 | 19.551521 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | 23.134182 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 695 | - | - |
| Coils | Coil | Coil | 3 | 30 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_031266750.1 | mediator of RNA polymerase II transcription subunit 34 isoform X2 [Pistacia vera] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7HCJ0 | ATP-dependent DNA helicase OS=Acer yangbiense OX=1000413 GN=EZV62_019834 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology