Basic Information
Locus ID:
evm.TU.LG05.910
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 16153237 | 16184134 | + | evm.TU.LG05.910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 138,150.81 Da | 50.15 | 71.64 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 770 | 826 | 1.1303E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 819 | 1195 | 1.3E-37 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 787 | 825 | 2.0E-10 | IPR023780 |
| Pfam | PF01426 | BAH domain | 508 | 616 | 1.6E-11 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 660 | 1196 | 7.28E-80 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 764 | 833 | 2.75E-13 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 442 | 605 | 3.6E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 663 | 1213 | 6.5E-248 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 989 | 1162 | 6.5E-248 | - |
| SMART | SM00298 | chromo_7 | 770 | 829 | 7.1E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 504 | 620 | 1.4E-22 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 838 | 1193 | 1.1E-30 | IPR001525 |
| PIRSF | PIRSF037404 | DNMT1 | 591 | 734 | 1.4E-7 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 1118 | 1208 | 4.0E-20 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 160 | 395 | 1500.0 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 816 | 1088 | 4.9E-39 | IPR017198 |
| PIRSF | PIRSF037404 | DNMT1 | 451 | 596 | 5.2E-6 | IPR017198 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 504 | 620 | 18.15353 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 661 | 1203 | 50.198589 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 771 | 824 | 10.9828 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 841 | 853 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 662 | 678 | 3.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 930 | 943 | 3.4E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 884 | 898 | 3.4E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 78 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.1 | chromomethylase 2. | 0 |
| RefSeq | XP_031267644.1 | DNA (cytosine-5)-methyltransferase CMT2-like [Pistacia vera] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2H5QFQ4 | Cytosine-specific methyltransferase (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_225700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology