Basic Information
Locus ID:
evm.TU.LG05.899
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10684893 | 10688162 | - | evm.TU.LG05.899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.52 | 55,971.04 Da | 49.84 | 70.50 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 216 | 492 | 1.10016E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 327 | 362 | 3.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 367 | 407 | 2.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 492 | 7.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 193 | 493 | 4.26E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 152 | 494 | 1.0E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 323 | 362 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 319 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 236 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 453 | 492 | 9.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 407 | 8.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 239 | 279 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 450 | 110.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 362 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 372 | 416 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 247 | 288 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 460 | 493 | 14.184453 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 371 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 460 | 493 | 11.73468 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 266 | 280 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 394 | 408 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 59 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_010690812.2 | protein FIZZY-RELATED 3 [Beta vulgaris subsp. vulgaris] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S028 | WD_REPEATS_REGION domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_009880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology