Basic Information
Locus ID:
evm.TU.LG05.887
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 15277689 | 15279783 | - | evm.TU.LG05.887 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 31,056.52 Da | 60.52 | 94.27 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 221 | 263 | 7.3604E-15 | - |
| Pfam | PF17123 | RING-like zinc finger | 221 | 249 | 6.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 216 | 267 | 2.43E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 271 | 1.6E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 222 | 262 | 5.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 263 | 13.049892 | IPR001841 |
| Coils | Coil | Coil | 22 | 42 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006478805.2 | uncharacterized protein LOC102627080 [Citrus sinensis] | 0 |
| TrEMBL | A0A067EBH4 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037450mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.1914, evm.TU.LG05.885, evm.TU.LG05.887 ... |