Basic Information
Locus ID:
evm.TU.LG05.885
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 15268491 | 15270369 | - | evm.TU.LG05.885 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 30,398.79 Da | 55.16 | 95.64 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 215 | 257 | 5.08065E-16 | - |
| Pfam | PF17123 | RING-like zinc finger | 215 | 243 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 262 | 8.11E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 265 | 1.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 216 | 256 | 5.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 216 | 257 | 13.064645 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006417042.1 | E3 ubiquitin-protein ligase MPSR1 [Eutrema salsugineum] | 0 |
| TrEMBL | A0A5C7HV56 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_014729 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 5 | evm.TU.LG03.1914, evm.TU.LG05.885, evm.TU.LG05.887 ... |