Basic Information
Locus ID:
evm.TU.LG05.852
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the phosphoglycerate kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10090560 | 10099455 | - | evm.TU.LG05.852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 76,754.44 Da | 52.15 | 94.99 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 507 | 619 | 0.00307312 | - |
| Pfam | PF02390 | Putative methyltransferase | 503 | 640 | 2.7E-24 | IPR003358 |
| Pfam | PF00162 | Phosphoglycerate kinase | 105 | 449 | 1.5E-56 | IPR001576 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 492 | 643 | 5.9E-12 | IPR029063 |
| SUPERFAMILY | SSF53748 | Phosphoglycerate kinase | 102 | 485 | 1.18E-65 | IPR036043 |
| Gene3D | G3DSA:3.40.50.1260 | - | 274 | 484 | 4.7E-36 | IPR015824 |
| Gene3D | G3DSA:3.40.50.1260 | - | 91 | 272 | 2.1E-31 | IPR015824 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 485 | 691 | 8.7E-46 | - |
| ProSiteProfiles | PS51625 | SAM-dependent methyltransferase TRMB-type domain profile. | 458 | 690 | 41.311958 | IPR003358 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 104 | 120 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 200 | 215 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 282 | 301 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 259 | 281 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 403 | 428 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 462 | 479 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 125 | 147 | 2.0E-20 | IPR001576 |
| PRINTS | PR00477 | Phosphoglycerate kinase family signature | 228 | 250 | 2.0E-20 | IPR001576 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00710 (Carbon fixation by Calvin cycle)
map00710 (Carbon fixation by Calvin cycle)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Module:
M00001 (Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate)
M00002 (Glycolysis, core module involving three-carbon compounds)
M00003 (Gluconeogenesis, oxaloacetate => fructose-6P)
M00165 (Reductive pentose phosphate cycle (Calvin cycle))
M00308 (Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P)
M00552 (D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17660.1 | tRNA (guanine-N-7) methyltransferase. | 0 |
| RefSeq | XP_021863270.1 | uncharacterized protein LOC110802147 [Spinacia oleracea] | 0 |
| O52632 | Phosphoglycerate kinase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W) OX=272562 GN=pgk PE=3 SV=1 | 0 | |
| TrEMBL | A0A0K9RUG3 | Phosphoglycerate kinase OS=Spinacia oleracea OX=3562 GN=SOVF_033860 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14980 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25359 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030458 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g161710 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006883, gene:ENSEOMG00000008075 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0018050, CQ.Regalona.r1.7BG0020340 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273130 |
| Apiaceae | Apium graveolens | 1 | Ag2G02987 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721309 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1766.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G21770 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1355 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1387 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01050 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g06930 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1481 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006323 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37234 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.1963, BH01.2258, BH01.2263, CH01.2357 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0125800, gene-QOZ80_2BG0181590 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0038640.1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013191 |
| Poaceae | Oryza coarctata | 1 | Oco19G004960 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g30550.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G223300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502452, Pt_Chr0502456 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G010060, Chr13G015060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G261200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG021080, gene_TRIDC1BG025560 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G140900.1, TraesCS1B02G157400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb047240_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48061 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16108 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.852, evm.TU.LG25.475 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g11900 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1536 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5238 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21004 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3924 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.533 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7705 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-358 |
| Salicaceae | Populus euphratica | 2 | populus_peu07922, populus_peu14453 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630015 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031747 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4520 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1912 |
| Zosteraceae | Zostera marina | 1 | Zosma03g32230.v3.1 |