Basic Information
Locus ID:
evm.TU.LG05.84
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
AFB3
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 787664 | 790765 | + | evm.TU.LG05.84 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 64,819.36 Da | 40.10 | 99.17 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 2.1E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 1.6E-23 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 19 | 535 | 4.4E-35 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 1.6E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 576 | 4.3E-171 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 340.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 170.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 391 | 4.1 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 1.3E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 333 | 366 | 540.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 476 | 501 | 420.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_031272524.1 | protein AUXIN SIGNALING F-BOX 2-like [Pistacia vera] | 0 |
| Q9LW29 | Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana OX=3702 GN=AFB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P5FCD2 | F-box domain containing protein OS=Trema orientale OX=63057 GN=TorAFB2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology