Basic Information
Locus ID:
evm.TU.LG05.832
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 13211152 | 13213392 | - | evm.TU.LG05.832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.79 | 16,652.62 Da | 44.61 | 88.53 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 17 | 79 | 6.06454E-11 | IPR002048 |
| CDD | cd00051 | EFh | 93 | 140 | 4.59574E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 17 | 78 | 6.0E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 91 | 141 | 1.3E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 7 | 141 | 4.18E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 83 | 3.3E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 90 | 146 | 1.4E-16 | - |
| SMART | SM00054 | efh_1 | 53 | 81 | 0.13 | IPR002048 |
| SMART | SM00054 | efh_1 | 17 | 45 | 6.4E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 93 | 121 | 1.2E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 13 | 48 | 14.90394 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 89 | 124 | 15.685013 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 49 | 84 | 10.663839 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 26 | 38 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 102 | 114 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 62 | 74 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03000.1 | EF hand calcium-binding protein family. Calmodulin like protein localized in the plant vacuolar compartment with a function of binding and modifying the activity of a tonoplast transporter (AtNHX1) from within the vacuole in a Ca+2- and pH-dependent manner | 0 |
| RefSeq | XP_021893597.1 | probable calcium-binding protein CML18 [Carica papaya] | 0 |
| Q9AWK2 | Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica OX=39947 GN=CML11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q8UB69 | Calmodulin-like protein 17 OS=Carica papaya OX=3649 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology