Basic Information
Locus ID:
evm.TU.LG05.738
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ubiquitin-60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 10572655 | 10579419 | + | evm.TU.LG05.738 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 28,060.73 Da | 42.00 | 92.73 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 90 | 117 | 1.7E-7 | IPR000626 |
| Pfam | PF01020 | Ribosomal L40e family | 121 | 141 | 4.9E-8 | IPR001975 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 69 | 126 | 1.24E-9 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 43 | 119 | 4.4E-13 | - |
| Gene3D | G3DSA:4.10.1060.50 | - | 120 | 144 | 5.3E-8 | IPR038587 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 91 | 119 | 11.115551 | IPR000626 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36170.1 | Ubiquitin supergroup;Ribosomal protein L40e. | 0 |
| RefSeq | XP_031116060.1 | ubiquitin isoform X2 [Ipomoea triloba] | 0 |
| P49636 | Ubiquitin-ribosomal protein eL40 fusion protein OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G2W6U8 | Ubiquitin-60S ribosomal protein L40-2 OS=Capsicum baccatum OX=33114 GN=CQW23_19809 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.738, evm.TU.LG08.1254 |