Basic Information
Locus ID:
evm.TU.LG05.555
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 6225526 | 6229880 | + | evm.TU.LG05.555 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 38,617.46 Da | 62.72 | 68.23 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 295 | 337 | 4.02746E-18 | - |
| Pfam | PF13639 | Ring finger domain | 296 | 337 | 2.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 338 | 1.48E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 340 | 1.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 296 | 336 | 1.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 296 | 337 | 13.020386 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73760.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011043560.1 | PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Populus euphratica] | 0 |
| Q7XTV7 | Probable E3 ubiquitin-protein ligase HIP1 OS=Oryza sativa subsp. japonica OX=39947 GN=HIP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J5AKX0 | RING-type domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_006598 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.553, evm.TU.LG05.555, evm.TU.LG25.770 ... |