Basic Information
Locus ID:
evm.TU.LG05.55
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Lysosomal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 538423 | 550466 | + | evm.TU.LG05.55 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 115,691.40 Da | 40.07 | 81.77 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 39 | 316 | 0.0 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 357 | 449 | 5.6E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 40 | 352 | 1.3E-93 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 901 | 1008 | 1.4E-10 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 605 | 820 | 9.0E-48 | IPR011682 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 463 | 1012 | 2.67E-142 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 356 | 450 | 6.54E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 28 | 353 | 7.78E-106 | IPR011330 |
| Gene3D | G3DSA:2.60.40.1360 | - | 888 | 1016 | 9.8E-35 | - |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 868 | 1.5E-91 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 400 | 454 | 7.8E-23 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 321 | 399 | 1.6E-28 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 477 | 603 | 4.5E-31 | IPR013780 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 39 | 320 | 1.1E-121 | IPR027291 |
| SMART | SM00872 | Alpha_mann_mid_2 | 357 | 431 | 2.0E-23 | IPR015341 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 18 | 5.0 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_044502294.1 | probable alpha-mannosidase At5g13980 [Mangifera indica] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HDU9 | alpha-mannosidase OS=Acer yangbiense OX=1000413 GN=EZV62_020204 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology