Basic Information
Locus ID:
evm.TU.LG05.520
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 6438099 | 6440848 | - | evm.TU.LG05.520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 52,591.76 Da | 43.12 | 74.14 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 155 | 437 | 2.21523E-43 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 190 | 237 | 5.2E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 299 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 348 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 408 | 437 | 0.0025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 151 | 438 | 5.49E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 84 | 440 | 3.6E-108 | IPR015943 |
| SMART | SM00320 | WD40_4 | 261 | 300 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 398 | 437 | 3.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 214 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 395 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 348 | 2.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 217 | 257 | 3.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 223 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 268 | 300 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 405 | 438 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 224 | 266 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 268 | 300 | 10.23196 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 405 | 438 | 11.101955 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 424 | 438 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_031277244.1 | cell division cycle 20.5, cofactor of APC complex-like [Pistacia vera] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | V4VF18 | ANAPC4_WD40 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10031460mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology