Basic Information
Locus ID:
evm.TU.LG05.447
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4742776 | 4748251 | - | evm.TU.LG05.447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 45,575.39 Da | 40.05 | 80.73 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 290 | 5.66E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 317 | 2.3E-18 | IPR015943 |
| SMART | SM00320 | WD40_4 | 32 | 70 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.35 | IPR001680 |
| SMART | SM00320 | WD40_4 | 247 | 288 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 157 | 360.0 | IPR001680 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 386 | 398 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_021864817.1 | autophagy-related protein 18c-like [Spinacia oleracea] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9B0V2 | Autophagy-related protein 18c OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology