Basic Information
Locus ID:
evm.TU.LG05.347
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 3958151 | 3966462 | - | evm.TU.LG05.347 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.45 | 76,029.27 Da | 55.52 | 68.62 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 398 | 527 | 6.03419E-62 | - |
| CDD | cd00201 | WW | 47 | 76 | 3.70607E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 410 | 518 | 1.5E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 203 | 373 | 7.8E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 39 | 76 | 4.79E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 251 | 535 | 1.06E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 156 | 388 | 1.4E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 389 | 560 | 4.6E-60 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 41 | 89 | 1.0E-5 | - |
| SMART | SM00487 | ultradead3 | 198 | 401 | 6.9E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 438 | 518 | 1.1E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 45 | 78 | 1.6E-5 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 44 | 78 | 11.1717 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 413 | 557 | 26.313545 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 179 | 207 | 11.056714 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 210 | 384 | 29.390146 | IPR014001 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 50 | 76 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 330 | 338 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 550 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 74 | 103 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.6 | - | 0 |
| RefSeq | XP_031249862.1 | DEAD-box ATP-dependent RNA helicase 46 [Pistacia vera] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6QXP4 | DEAD-box ATP-dependent RNA helicase 46 OS=Carpinus fangiana OX=176857 GN=FH972_007406 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology