Basic Information
Locus ID:
evm.TU.LG05.262
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 2914510 | 2952170 | + | evm.TU.LG05.262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 46,569.68 Da | 50.63 | 96.13 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 117 | 151 | 1.4E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 111 | 191 | 6.8E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 109 | 156 | 9.1E-6 | - |
| SMART | SM00256 | fbox_2 | 118 | 157 | 8.7E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 112 | 159 | 12.226393 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_026455989.1 | F-box protein SKIP23-like [Papaver somniferum] | 0 |
| TrEMBL | A0A5C7I6W4 | F-box domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_012024 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30106190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.262 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.121 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8154, nbisL1-mrna-8155 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.32, add.evm.TU.utg000012l.33 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19906, nbisL1-mrna-19907 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-110 |
| Salicaceae | Populus euphratica | 1 | populus_peu04019 |