HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: evm.TU.LG05.256
Species & Taxonomic ID: Nitraria sibirica & 357931
Genome Assembly:
Description: SGF29 tudor-like domain
Maps and Mapping Data
Chromosome Start End Strand ID
LG05 2849631 2850145 - evm.TU.LG05.256
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.24 11,472.07 Da 40.28 96.44 0.01
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF07039 SGF29 tudor-like domain 2 56 2.8E-7 IPR010750
Gene3D G3DSA:2.30.30.140 - 9 102 3.3E-7 -
ProSiteProfiles PS51518 SGF29 C-terminal domain profile. 1 104 13.106159 IPR010750
KEGG Pathway
KO Term:
K11364 (SAGA-associated factor 29)
Best hit
Source Best Hit ID Description E-value
TAIR AT3G27460.2 SGF29 tudor-like domain. 0
RefSeq XP_048600839.1 SAGA-associated factor 29 homolog A-like [Brassica napus] 0
Swiss-Prot Q8RXY6 SAGA-associated factor 29 homolog A OS=Arabidopsis thaliana OX=3702 GN=SGF29A PE=1 SV=1 0
TrEMBL A0A6N2KH73 SGF29 C-terminal domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25585 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Nitrariaceae Nitraria sibirica 3 evm.TU.LG04.2276, evm.TU.LG04.2279, evm.TU.LG05.256
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.