Basic Information
Locus ID:
evm.TU.LG05.225
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2338793 | 2342113 | - | evm.TU.LG05.225 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 60,559.40 Da | 57.59 | 60.60 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 156 | 208 | 2.45969E-28 | - |
| Pfam | PF00412 | LIM domain | 156 | 211 | 2.2E-10 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 305 | 528 | 1.6E-103 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 182 | 236 | 1.56E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 148 | 181 | 1.78E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 151 | 227 | 1.4E-15 | - |
| SMART | SM00726 | uim | 42 | 61 | 150.0 | IPR003903 |
| SMART | SM00726 | uim | 99 | 118 | 0.13 | IPR003903 |
| SMART | SM00132 | lim_4 | 155 | 207 | 4.5E-14 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 99 | 118 | 9.665059 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 154 | 214 | 12.2266 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 156 | 190 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 133 | - | - |
| Coils | Coil | Coil | 55 | 86 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021847823.1 | protein DA1-related 1 isoform X1 [Spinacia oleracea] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C9ENY7 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology