Basic Information
Locus ID:
evm.TU.LG05.2220
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 46628389 | 46630145 | - | evm.TU.LG05.2220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 35,868.52 Da | 41.47 | 95.28 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 26 | 197 | 1.89862E-115 | - |
| CDD | cd18787 | SF2_C_DEAD | 194 | 288 | 1.28575E-45 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 204 | 279 | 3.2E-24 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 46 | 194 | 1.0E-37 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 90 | 299 | 5.57E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 179 | 7.8E-13 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 180 | 316 | 5.9E-44 | IPR027417 |
| SMART | SM00487 | ultradead3 | 40 | 221 | 1.0E-39 | IPR014001 |
| SMART | SM00490 | helicmild6 | 198 | 279 | 5.3E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 197 | 22.310534 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 168 | 318 | 22.907635 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 21 | 49 | 10.632947 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 168 | 176 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_021763731.1 | eukaryotic initiation factor 4A-9-like [Chenopodium quinoa] | 0 |
| Q40467 | Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A249Y6Z7 | Eukaryotic initiation factor 4A OS=Hylocereus polyrhizus OX=1195597 GN=IF4A1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology