Basic Information
Locus ID:
evm.TU.LG05.220
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 2305599 | 2311560 | + | evm.TU.LG05.220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 45,477.29 Da | 66.44 | 58.37 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 222 | 266 | 2.05389E-30 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 224 | 264 | 1.5E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 220 | 277 | 1.16E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 184 | 277 | 6.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 224 | 264 | 2.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 224 | 265 | 13.669518 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 239 | 248 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010680923.1 | E3 ubiquitin-protein ligase RNF185 [Beta vulgaris subsp. vulgaris] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QVW5 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_142590 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16929 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg14772 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10520 |
| Poaceae | Triticum aestivum | 1 | TraesCS5D02G015200.1.cds1 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG05.220 |