Basic Information
Locus ID:
evm.TU.LG05.2124
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 44214190 | 44217744 | + | evm.TU.LG05.2124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 35,345.98 Da | 41.22 | 69.17 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 43 | 125 | 6.15124E-45 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 238 | 301 | 2.6122E-22 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 42 | 125 | 3.1E-17 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 238 | 305 | 2.4E-13 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 137 | 9.42E-29 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 235 | 307 | 2.09E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 236 | 312 | 1.2E-18 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 30 | 138 | 2.7E-27 | IPR036431 |
| SMART | SM00501 | bright_3 | 39 | 130 | 2.8E-33 | IPR001606 |
| SMART | SM01014 | ARID_2 | 35 | 125 | 2.3E-27 | - |
| SMART | SM00398 | hmgende2 | 237 | 306 | 1.6E-14 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 238 | 305 | 14.463983 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 38 | 129 | 25.366575 | IPR001606 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 270 | 289 | 3.7E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 289 | 309 | 3.7E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_044472807.1 | high mobility group B protein 10 [Mangifera indica] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IFP7 | High mobility group B protein 10 OS=Acer yangbiense OX=1000413 GN=EZV62_009402 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology