Basic Information
Locus ID:
evm.TU.LG05.1997
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 42739244 | 42772591 | + | evm.TU.LG05.1997 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 168,552.81 Da | 34.52 | 106.86 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 945 | 1239 | 7.15924E-90 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1262 | 1482 | 1.3908E-121 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 637 | 837 | 7.39466E-108 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 335 | 611 | 5.86536E-96 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 948 | 1187 | 1.4E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 322 | 590 | 5.8E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1281 | 1429 | 1.0E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 655 | 789 | 1.5E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 634 | 859 | 9.5E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1257 | 1494 | 4.02E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 312 | 611 | 5.36E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 945 | 1246 | 1.18E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 303 | 617 | 3.3E-45 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 909 | 1245 | 2.3E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 872 | 3.6E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1247 | 1500 | 6.5E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 664 | 837 | 8.9E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1290 | 1475 | 2.1E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 947 | 1227 | 35.744419 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 322 | 603 | 32.662251 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 637 | 860 | 22.128962 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1264 | 1498 | 17.927301 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 762 | 776 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 892 | 906 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 887 | 917 | - | - |
| Coils | Coil | Coil | 484 | 504 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_044482645.1 | ABC transporter C family member 3-like [Mangifera indica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IEY6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_008956 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology