Basic Information
Locus ID:
evm.TU.LG05.1959
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 42288293 | 42294304 | + | evm.TU.LG05.1959 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 83,204.86 Da | 41.81 | 92.28 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 363 | 662 | 4.34061E-145 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 46 | 345 | 3.45898E-166 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 81 | 340 | 3.7E-8 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 368 | 658 | 4.6E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 45 | 344 | 7.33E-41 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 363 | 663 | 1.18E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 361 | 662 | 1.8E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 45 | 344 | 1.6E-36 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 46 | 346 | 34.792255 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 362 | 663 | 32.242546 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_006474966.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Citrus sinensis] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A067F498 | glycerophosphodiester phosphodiesterase OS=Citrus sinensis OX=2711 GN=CISIN_1g003550mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology