Basic Information
Locus ID:
evm.TU.LG05.1904
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RNA-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 39534860 | 39542171 | - | evm.TU.LG05.1904 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 26,749.79 Da | 46.44 | 68.14 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 146 | 228 | 6.65228E-29 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 148 | 216 | 9.8E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 112 | 244 | 1.32E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 142 | 233 | 4.7E-19 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 147 | 223 | 5.1E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 146 | 232 | 11.775786 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 248 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_010680428.1 | RNA-binding protein 2 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| G7ID19 | RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXE2 | RRM domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_130520 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology