Basic Information
Locus ID:
evm.TU.LG05.1732
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
domain in FBox and BRCT domain containing plant proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG05 | 39333179 | 39334926 | + | evm.TU.LG05.1732 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 60,415.82 Da | 45.13 | 99.11 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 31 | 67 | 3.2E-4 | IPR001810 |
| Pfam | PF08387 | FBD | 450 | 487 | 1.3E-10 | IPR006566 |
| SUPERFAMILY | SSF52047 | RNI-like | 191 | 408 | 7.85E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 29 | 70 | 9.55E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 134 | 505 | 7.2E-6 | IPR032675 |
| SMART | SM00579 | 9598neu4hmm | 450 | 519 | 5.0E-7 | IPR006566 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 28 | 81 | 9.285514 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56420.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_024933444.2 | putative F-box/FBD/LRR-repeat protein At4g03220 [Ziziphus jujuba var. spinosa] | 0 |
| Q9FM89 | F-box/FBD/LRR-repeat protein At5g56420 OS=Arabidopsis thaliana OX=3702 GN=At5g56420 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6P6GH46 | putative F-box/FBD/LRR-repeat protein At4g03220 OS=Ziziphus jujuba OX=326968 GN=LOC112492941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19385 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12468, gene_7579 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah008629, Ah008630, Ah008631 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00026251, GOSA_00026252 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22603, Sgl22736, Sgl27851 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0021920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018600 |
| Arecaceae | Cocos nucifera | 4 | COCNU_08G004250, scaffold000903G000030 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103699294, gene-LOC103713893, gene-LOC120106725 ... |
| Brassicaceae | Arabidopsis thaliana | 5 | AT1G56400.1, AT2G17305.1, AT3G29830.1, AT3G62230.1 ... |
| Brassicaceae | Eutrema salsugineum | 11 | Thhalv10003202m.g.v1.0, Thhalv10003319m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 10 | Sp4g03660.v2.2, Sp4g04050.v2.2, Sp4g05500.v2.2 ... |
| Brassicaceae | Brassica nigra | 13 | BniB02g027420.2N, BniB02g086780.2N, BniB03g060200.2N ... |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.1732, evm.TU.LG05.1734, evm.TU.LG08.732 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.646, evm.TU.LG24.106 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g01440, gene.Posoc10g01450 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.411 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23568 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6728 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10410 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.485 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22093 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23560 |
| Salicaceae | Populus euphratica | 2 | populus_peu00330, populus_peu17391 |