Basic Information
Locus ID:
evm.TU.LG05.1729
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 36583126 | 36588623 | - | evm.TU.LG05.1729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 54,268.96 Da | 54.06 | 69.37 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 125 | 177 | 1.16405E-27 | - |
| Pfam | PF12315 | Protein DA1 | 275 | 472 | 8.4E-96 | IPR022087 |
| Pfam | PF00412 | LIM domain | 125 | 179 | 5.3E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 151 | 206 | 3.8E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 118 | 150 | 8.08E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 118 | 183 | 6.2E-15 | - |
| SMART | SM00132 | lim_4 | 124 | 176 | 4.1E-11 | IPR001781 |
| SMART | SM00726 | uim | 79 | 98 | 1.2 | IPR003903 |
| SMART | SM00726 | uim | 47 | 66 | 0.0079 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 123 | 183 | 11.9197 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 79 | 98 | 8.790563 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 47 | 66 | 10.836403 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 125 | 159 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 42 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_006386519.1 | protein DA1 isoform X2 [Populus trichocarpa] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZA37 | LIM zinc-binding domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology